J3_8CVM_007

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGAUUA*UAG*CGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVM_007 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.1287

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8CVM|1|a|C|1374
8CVM|1|a|G|1375
8CVM|1|a|A|1376
8CVM|1|a|U|1377
8CVM|1|a|U|1378
8CVM|1|a|A|1379
*
8CVM|1|a|U|1809
8CVM|1|a|A|1810
8CVM|1|a|G|1811
*
8CVM|1|a|C|1823
8CVM|1|a|G|1824
8CVM|1|a|A|1825
8CVM|1|a|G|1826

Current chains

Chain a

23S ribosomal RNA

Nearby chains