J3_8CVM_017

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGUGGUUCU*AGGAUUGGCCAGUGAGAAAUG*CUGGUGUG

Length

38 nucleotides

Bulged bases

8CVM|1|a|A|366, 8CVM|1|a|U|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVM|1|a|U|333
8CVM|1|a|G|334
8CVM|1|a|U|335
8CVM|1|a|G|336
8CVM|1|a|G|337
8CVM|1|a|U|338
8CVM|1|a|U|339
8CVM|1|a|C|340
8CVM|1|a|U|341
*
8CVM|1|a|A|350
8CVM|1|a|G|351
8CVM|1|a|G|352
8CVM|1|a|A|353
8CVM|1|a|U|354
8CVM|1|a|U|355
8CVM|1|a|G|356
8CVM|1|a|G|357
8CVM|1|a|C|358
8CVM|1|a|C|359
8CVM|1|a|A|360
8CVM|1|a|G|361
8CVM|1|a|U|362
8CVM|1|a|G|363
8CVM|1|a|A|364
8CVM|1|a|G|365
8CVM|1|a|A|366
8CVM|1|a|A|367
8CVM|1|a|A|368
8CVM|1|a|U|369
8CVM|1|a|G|370
*
8CVM|1|a|C|441
8CVM|1|a|U|442
8CVM|1|a|G|443
8CVM|1|a|G|444
8CVM|1|a|U|445
8CVM|1|a|G|446
8CVM|1|a|U|447
8CVM|1|a|G|448

Current chains

Chain a

23S ribosomal RNA

Nearby chains