J3_8CVM_019

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGA*UUGAAAGAGUGC*GCUCAC

Length

21 nucleotides

Bulged bases

8CVM|1|a|A|1171

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVM|1|a|G|1138
8CVM|1|a|G|1139
8CVM|1|a|A|1140
*
8CVM|1|a|U|1164
8CVM|1|a|U|1165
8CVM|1|a|G|1166
8CVM|1|a|A|1167
8CVM|1|a|A|1168
8CVM|1|a|A|1169
8CVM|1|a|G|1170
8CVM|1|a|A|1171
8CVM|1|a|G|1172
8CVM|1|a|U|1173
8CVM|1|a|G|1174
8CVM|1|a|C|1175
*
8CVM|1|a|G|1182
8CVM|1|a|C|1183
8CVM|1|a|U|1184
8CVM|1|a|C|1185
8CVM|1|a|A|1186
8CVM|1|a|C|1187

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6