J3_8CVM_021
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GCC*GACUAGUGAUCU*ACUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8CVM|1|a|A|2570, 8CVM|1|a|U|2572, 8CVM|1|a|A|2608
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CVM_021 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0981
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8CVM|1|a|G|2464
8CVM|1|a|C|2465
8CVM|1|a|C|2466
*
8CVM|1|a|G|2566
8CVM|1|a|A|2567
8CVM|1|a|C|2568
8CVM|1|a|U|2569
8CVM|1|a|A|2570
8CVM|1|a|G|2571
8CVM|1|a|U|2572
8CVM|1|a|G|2573
8CVM|1|a|A|2574
8CVM|1|a|U|2575
8CVM|1|a|C|2576
8CVM|1|a|U|2577
*
8CVM|1|a|A|2603
8CVM|1|a|C|2604
8CVM|1|a|U|2605
8CVM|1|a|C|2606
8CVM|1|a|A|2607
8CVM|1|a|A|2608
8CVM|1|a|C|2609
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain 2
- 50S ribosomal protein L35
- Chain k
- 50S ribosomal protein L15
- Chain v
- 50S ribosomal protein L27
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