J3_8CVO_001
3D structure
- PDB id
- 8CVO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CVO_001 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0764
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.3
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
8CVO|1|A|C|920
8CVO|1|A|A|921
8CVO|1|A|A|922
8CVO|1|A|G|923
*
8CVO|1|A|C|1330
8CVO|1|A|U|1331
8CVO|1|A|A|1332
8CVO|1|A|G|1333
8CVO|1|A|U|1334
8CVO|1|A|A|1335
8CVO|1|A|A|1336
*
8CVO|1|A|U|1359
8CVO|1|A|G|1360
8CVO|1|A|A|1361
8CVO|1|A|A|1362
8CVO|1|A|U|1363
8CVO|1|A|A|1364
8CVO|1|A|C|1365
8CVO|1|A|G|1366
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- 30S ribosomal protein S7
- Chain J
- 30S ribosomal protein S9
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