J3_8CVO_003
3D structure
- PDB id
- 8CVO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- AUUAAUUC*GUAGAACCUUAC*GGCUU
- Length
- 25 nucleotides
- Bulged bases
- 8CVO|1|A|A|959, 8CVO|1|A|G|960, 8CVO|1|A|A|962
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CVO_003 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0587
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.3
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8CVO|1|A|A|939
8CVO|1|A|U|940
8CVO|1|A|U|941
8CVO|1|A|A|942
8CVO|1|A|A|943
8CVO|1|A|U|944
8CVO|1|A|U|945
8CVO|1|A|C|946
*
8CVO|1|A|G|957
8CVO|1|A|U|958
8CVO|1|A|A|959
8CVO|1|A|G|960
8CVO|1|A|A|961
8CVO|1|A|A|962
8CVO|1|A|C|963
8CVO|1|A|C|964
8CVO|1|A|U|965
8CVO|1|A|U|966
8CVO|1|A|A|967
8CVO|1|A|C|968
*
8CVO|1|A|G|1207
8CVO|1|A|G|1208
8CVO|1|A|C|1209
8CVO|1|A|U|1210
8CVO|1|A|U|1211
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain M
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S14 type Z
- Chain U
- 30S ribosomal protein S19
Coloring options: