J3_8CVO_009
3D structure
- PDB id
- 8CVO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UUUGACAU*ACAG*CUUAUG
- Length
- 18 nucleotides
- Bulged bases
- 8CVO|1|A|U|1200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CVO_009 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.1641
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CVO|1|A|U|974
8CVO|1|A|U|975
8CVO|1|A|U|976
8CVO|1|A|G|977
8CVO|1|A|A|978
8CVO|1|A|C|979
8CVO|1|A|A|980
8CVO|1|A|U|981
*
8CVO|1|A|A|1029
8CVO|1|A|C|1030
8CVO|1|A|A|1031
8CVO|1|A|G|1032
*
8CVO|1|A|C|1196
8CVO|1|A|U|1197
8CVO|1|A|U|1198
8CVO|1|A|A|1199
8CVO|1|A|U|1200
8CVO|1|A|G|1201
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S3
- Chain S
- 30S ribosomal protein S14 type Z
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