J3_8CVO_011
3D structure
- PDB id
- 8CVO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UGU*AGACCGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 8CVO|1|A|U|1169
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CVO_011 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1134
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CVO|1|A|U|1101
8CVO|1|A|G|1102
8CVO|1|A|U|1103
*
8CVO|1|A|A|1141
8CVO|1|A|G|1142
8CVO|1|A|A|1143
8CVO|1|A|C|1144
8CVO|1|A|C|1145
8CVO|1|A|G|1146
8CVO|1|A|C|1147
*
8CVO|1|A|G|1161
8CVO|1|A|A|1162
8CVO|1|A|G|1163
8CVO|1|A|G|1164
8CVO|1|A|A|1165
8CVO|1|A|A|1166
8CVO|1|A|G|1167
8CVO|1|A|G|1168
8CVO|1|A|U|1169
8CVO|1|A|G|1170
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- 30S ribosomal protein S7
- Chain J
- 30S ribosomal protein S9
- Chain M
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14 type Z
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