J3_8E30_001

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8E30|1|I|U|686, 8E30|1|I|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E30_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3135

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8E30|1|I|U|683
8E30|1|I|G|684
8E30|1|I|A|685
8E30|1|I|U|686
8E30|1|I|C|687
8E30|1|I|U|688
8E30|1|I|A|689
*
8E30|1|I|U|773
8E30|1|I|G|774
8E30|1|I|G|775
*
8E30|1|I|C|791
8E30|1|I|A|792
8E30|1|I|A|793
8E30|1|I|A|794

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain R

50S ribosomal protein L34