J3_8E30_012

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E30|1|I|A|504, 8E30|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E30_012 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.102

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8E30|1|I|G|30
8E30|1|I|C|31
*
8E30|1|I|G|474
8E30|1|I|C|475
8E30|1|I|G|476
8E30|1|I|A|477
8E30|1|I|A|478
8E30|1|I|A|479
8E30|1|I|A|480
8E30|1|I|G|481
8E30|1|I|A|482
8E30|1|I|A|483
8E30|1|I|C|484
*
8E30|1|I|G|496
8E30|1|I|A|497
8E30|1|I|G|498
8E30|1|I|U|499
8E30|1|I|G|500
8E30|1|I|A|501
8E30|1|I|A|502
8E30|1|I|A|503
8E30|1|I|A|504
8E30|1|I|A|505
8E30|1|I|G|506
8E30|1|I|A|507
8E30|1|I|A|508
8E30|1|I|C|509
8E30|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22