J3_8E30_013

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8E30|1|I|U|34, 8E30|1|I|U|448, 8E30|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E30_013 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0489

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8E30|1|I|C|32
8E30|1|I|C|33
8E30|1|I|U|34
8E30|1|I|G|35
*
8E30|1|I|C|445
8E30|1|I|G|446
8E30|1|I|A|447
8E30|1|I|U|448
8E30|1|I|A|449
8E30|1|I|G|450
8E30|1|I|U|451
8E30|1|I|G|452
8E30|1|I|A|453
8E30|1|I|A|454
8E30|1|I|C|455
8E30|1|I|C|456
8E30|1|I|A|457
8E30|1|I|G|458
8E30|1|I|U|459
8E30|1|I|A|460
8E30|1|I|C|461
*
8E30|1|I|G|468
8E30|1|I|G|469
8E30|1|I|A|470
8E30|1|I|A|471
8E30|1|I|A|472
8E30|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain R

50S ribosomal protein L34