J3_8E32_012

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8E32|1|I|U|34, 8E32|1|I|U|448, 8E32|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E32_012 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0742

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8E32|1|I|C|32
8E32|1|I|C|33
8E32|1|I|U|34
8E32|1|I|G|35
*
8E32|1|I|C|445
8E32|1|I|G|446
8E32|1|I|A|447
8E32|1|I|U|448
8E32|1|I|A|449
8E32|1|I|G|450
8E32|1|I|U|451
8E32|1|I|G|452
8E32|1|I|A|453
8E32|1|I|A|454
8E32|1|I|C|455
8E32|1|I|C|456
8E32|1|I|A|457
8E32|1|I|G|458
8E32|1|I|U|459
8E32|1|I|A|460
8E32|1|I|C|461
*
8E32|1|I|G|468
8E32|1|I|G|469
8E32|1|I|A|470
8E32|1|I|A|471
8E32|1|I|A|472
8E32|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain R

50S ribosomal protein L34