J3_8E33_010

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E33_010 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0577

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

8E33|1|I|G|30
8E33|1|I|C|31
*
8E33|1|I|G|474
8E33|1|I|C|475
8E33|1|I|G|476
8E33|1|I|A|477
8E33|1|I|A|478
8E33|1|I|A|479
8E33|1|I|A|480
8E33|1|I|G|481
*
8E33|1|I|C|509
8E33|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains