J3_8E33_012

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8E33|1|I|U|34, 8E33|1|I|U|448, 8E33|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E33_012 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0443

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8E33|1|I|C|32
8E33|1|I|C|33
8E33|1|I|U|34
8E33|1|I|G|35
*
8E33|1|I|C|445
8E33|1|I|G|446
8E33|1|I|A|447
8E33|1|I|U|448
8E33|1|I|A|449
8E33|1|I|G|450
8E33|1|I|U|451
8E33|1|I|G|452
8E33|1|I|A|453
8E33|1|I|A|454
8E33|1|I|C|455
8E33|1|I|C|456
8E33|1|I|A|457
8E33|1|I|G|458
8E33|1|I|U|459
8E33|1|I|A|460
8E33|1|I|C|461
*
8E33|1|I|G|468
8E33|1|I|G|469
8E33|1|I|A|470
8E33|1|I|A|471
8E33|1|I|A|472
8E33|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain R

50S ribosomal protein L34