J3_8E35_017

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8E35|1|I|U|34, 8E35|1|I|U|448, 8E35|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E35_017 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0918

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8E35|1|I|C|32
8E35|1|I|C|33
8E35|1|I|U|34
8E35|1|I|G|35
*
8E35|1|I|C|445
8E35|1|I|G|446
8E35|1|I|A|447
8E35|1|I|U|448
8E35|1|I|A|449
8E35|1|I|G|450
8E35|1|I|U|451
8E35|1|I|G|452
8E35|1|I|A|453
8E35|1|I|A|454
8E35|1|I|C|455
8E35|1|I|C|456
8E35|1|I|A|457
8E35|1|I|G|458
8E35|1|I|U|459
8E35|1|I|A|460
8E35|1|I|C|461
*
8E35|1|I|G|468
8E35|1|I|G|469
8E35|1|I|A|470
8E35|1|I|A|471
8E35|1|I|A|472
8E35|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain R

50S ribosomal protein L34