J3_8E3L_008

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

8E3L|1|I|U|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E3L_008 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.144

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8E3L|1|I|G|2812
8E3L|1|I|A|2813
8E3L|1|I|A|2814
8E3L|1|I|C|2815
*
8E3L|1|I|G|2831
8E3L|1|I|U|2832
8E3L|1|I|U|2833
8E3L|1|I|G|2834
8E3L|1|I|A|2835
8E3L|1|I|U|2836
*
8E3L|1|I|A|2882
8E3L|1|I|A|2883
8E3L|1|I|U|2884
8E3L|1|I|G|2885
8E3L|1|I|A|2886
8E3L|1|I|A|2887
8E3L|1|I|C|2888

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain P

50S ribosomal protein L22

Chain Q

50S ribosomal protein L32