J3_8E3L_011

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8E3L|1|I|U|34, 8E3L|1|I|U|448, 8E3L|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E3L_011 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0852

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8E3L|1|I|C|32
8E3L|1|I|C|33
8E3L|1|I|U|34
8E3L|1|I|G|35
*
8E3L|1|I|C|445
8E3L|1|I|G|446
8E3L|1|I|A|447
8E3L|1|I|U|448
8E3L|1|I|A|449
8E3L|1|I|G|450
8E3L|1|I|U|451
8E3L|1|I|G|452
8E3L|1|I|A|453
8E3L|1|I|A|454
8E3L|1|I|C|455
8E3L|1|I|C|456
8E3L|1|I|A|457
8E3L|1|I|G|458
8E3L|1|I|U|459
8E3L|1|I|A|460
8E3L|1|I|C|461
*
8E3L|1|I|G|468
8E3L|1|I|G|469
8E3L|1|I|A|470
8E3L|1|I|A|471
8E3L|1|I|A|472
8E3L|1|I|G|473

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain R

50S ribosomal protein L34