J3_8E3M_012
3D structure
- PDB id
- 8E3M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to L-linker solithromycin conjugate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8E3M|1|I|U|34, 8E3M|1|I|U|448, 8E3M|1|I|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8E3M_012 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0506
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8E3M|1|I|C|32
8E3M|1|I|C|33
8E3M|1|I|U|34
8E3M|1|I|G|35
*
8E3M|1|I|C|445
8E3M|1|I|G|446
8E3M|1|I|A|447
8E3M|1|I|U|448
8E3M|1|I|A|449
8E3M|1|I|G|450
8E3M|1|I|U|451
8E3M|1|I|G|452
8E3M|1|I|A|453
8E3M|1|I|A|454
8E3M|1|I|C|455
8E3M|1|I|C|456
8E3M|1|I|A|457
8E3M|1|I|G|458
8E3M|1|I|U|459
8E3M|1|I|A|460
8E3M|1|I|C|461
*
8E3M|1|I|G|468
8E3M|1|I|G|469
8E3M|1|I|A|470
8E3M|1|I|A|471
8E3M|1|I|A|472
8E3M|1|I|G|473
Current chains
- Chain I
- 50S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L4
- Chain R
- 50S ribosomal protein L34
Coloring options: