J3_8E41_011

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E41|1|I|A|504, 8E41|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E41_011 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1035

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8E41|1|I|G|30
8E41|1|I|C|31
*
8E41|1|I|G|474
8E41|1|I|C|475
8E41|1|I|G|476
8E41|1|I|A|477
8E41|1|I|A|478
8E41|1|I|A|479
8E41|1|I|A|480
8E41|1|I|G|481
8E41|1|I|A|482
8E41|1|I|A|483
8E41|1|I|C|484
*
8E41|1|I|G|496
8E41|1|I|A|497
8E41|1|I|G|498
8E41|1|I|U|499
8E41|1|I|G|500
8E41|1|I|A|501
8E41|1|I|A|502
8E41|1|I|A|503
8E41|1|I|A|504
8E41|1|I|A|505
8E41|1|I|G|506
8E41|1|I|A|507
8E41|1|I|A|508
8E41|1|I|C|509
8E41|1|I|C|510

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22