J3_8E41_012

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8E41|1|I|U|34, 8E41|1|I|U|448, 8E41|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E41_012 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0464

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8E41|1|I|C|32
8E41|1|I|C|33
8E41|1|I|U|34
8E41|1|I|G|35
*
8E41|1|I|C|445
8E41|1|I|G|446
8E41|1|I|A|447
8E41|1|I|U|448
8E41|1|I|A|449
8E41|1|I|G|450
8E41|1|I|U|451
8E41|1|I|G|452
8E41|1|I|A|453
8E41|1|I|A|454
8E41|1|I|C|455
8E41|1|I|C|456
8E41|1|I|A|457
8E41|1|I|G|458
8E41|1|I|U|459
8E41|1|I|A|460
8E41|1|I|C|461
*
8E41|1|I|G|468
8E41|1|I|G|469
8E41|1|I|A|470
8E41|1|I|A|471
8E41|1|I|A|472
8E41|1|I|G|473

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain R

50S ribosomal protein L34