J3_8E42_011

3D structure

PDB id

8E42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and azithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E42|1|I|A|504, 8E42|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E42_011 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1095

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8E42|1|I|G|30
8E42|1|I|C|31
*
8E42|1|I|G|474
8E42|1|I|C|475
8E42|1|I|G|476
8E42|1|I|A|477
8E42|1|I|A|478
8E42|1|I|A|479
8E42|1|I|A|480
8E42|1|I|G|481
8E42|1|I|A|482
8E42|1|I|A|483
8E42|1|I|C|484
*
8E42|1|I|G|496
8E42|1|I|A|497
8E42|1|I|G|498
8E42|1|I|U|499
8E42|1|I|G|500
8E42|1|I|A|501
8E42|1|I|A|502
8E42|1|I|A|503
8E42|1|I|A|504
8E42|1|I|A|505
8E42|1|I|G|506
8E42|1|I|A|507
8E42|1|I|A|508
8E42|1|I|C|509
8E42|1|I|C|510

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22