J3_8E42_012

3D structure

PDB id

8E42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and azithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8E42|1|I|U|34, 8E42|1|I|U|448, 8E42|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E42_012 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0545

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8E42|1|I|C|32
8E42|1|I|C|33
8E42|1|I|U|34
8E42|1|I|G|35
*
8E42|1|I|C|445
8E42|1|I|G|446
8E42|1|I|A|447
8E42|1|I|U|448
8E42|1|I|A|449
8E42|1|I|G|450
8E42|1|I|U|451
8E42|1|I|G|452
8E42|1|I|A|453
8E42|1|I|A|454
8E42|1|I|C|455
8E42|1|I|C|456
8E42|1|I|A|457
8E42|1|I|G|458
8E42|1|I|U|459
8E42|1|I|A|460
8E42|1|I|C|461
*
8E42|1|I|G|468
8E42|1|I|G|469
8E42|1|I|A|470
8E42|1|I|A|471
8E42|1|I|A|472
8E42|1|I|G|473

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain R

50S ribosomal protein L34