J3_8E43_012

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8E43|1|I|U|34, 8E43|1|I|U|448, 8E43|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E43_012 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0619

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8E43|1|I|C|32
8E43|1|I|C|33
8E43|1|I|U|34
8E43|1|I|G|35
*
8E43|1|I|C|445
8E43|1|I|G|446
8E43|1|I|A|447
8E43|1|I|U|448
8E43|1|I|A|449
8E43|1|I|G|450
8E43|1|I|U|451
8E43|1|I|G|452
8E43|1|I|A|453
8E43|1|I|A|454
8E43|1|I|C|455
8E43|1|I|C|456
8E43|1|I|A|457
8E43|1|I|G|458
8E43|1|I|U|459
8E43|1|I|A|460
8E43|1|I|C|461
*
8E43|1|I|G|468
8E43|1|I|G|469
8E43|1|I|A|470
8E43|1|I|A|471
8E43|1|I|A|472
8E43|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain R

50S ribosomal protein L34