J3_8E44_012

3D structure

PDB id

8E44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC09

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8E44|1|I|U|34, 8E44|1|I|U|448, 8E44|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E44_012 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0511

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8E44|1|I|C|32
8E44|1|I|C|33
8E44|1|I|U|34
8E44|1|I|G|35
*
8E44|1|I|C|445
8E44|1|I|G|446
8E44|1|I|A|447
8E44|1|I|U|448
8E44|1|I|A|449
8E44|1|I|G|450
8E44|1|I|U|451
8E44|1|I|G|452
8E44|1|I|A|453
8E44|1|I|A|454
8E44|1|I|C|455
8E44|1|I|C|456
8E44|1|I|A|457
8E44|1|I|G|458
8E44|1|I|U|459
8E44|1|I|A|460
8E44|1|I|C|461
*
8E44|1|I|G|468
8E44|1|I|G|469
8E44|1|I|A|470
8E44|1|I|A|471
8E44|1|I|A|472
8E44|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain R

50S ribosomal protein L34