J3_8E45_013

3D structure

PDB id

8E45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC17

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8E45|1|I|U|34, 8E45|1|I|U|448, 8E45|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E45_013 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0674

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8E45|1|I|C|32
8E45|1|I|C|33
8E45|1|I|U|34
8E45|1|I|G|35
*
8E45|1|I|C|445
8E45|1|I|G|446
8E45|1|I|A|447
8E45|1|I|U|448
8E45|1|I|A|449
8E45|1|I|G|450
8E45|1|I|U|451
8E45|1|I|G|452
8E45|1|I|A|453
8E45|1|I|A|454
8E45|1|I|C|455
8E45|1|I|C|456
8E45|1|I|A|457
8E45|1|I|G|458
8E45|1|I|U|459
8E45|1|I|A|460
8E45|1|I|C|461
*
8E45|1|I|G|468
8E45|1|I|G|469
8E45|1|I|A|470
8E45|1|I|A|471
8E45|1|I|A|472
8E45|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain R

50S ribosomal protein L34