J3_8E46_012

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E46|1|I|A|504, 8E46|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E46_012 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1188

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8E46|1|I|G|30
8E46|1|I|C|31
*
8E46|1|I|G|474
8E46|1|I|C|475
8E46|1|I|G|476
8E46|1|I|A|477
8E46|1|I|A|478
8E46|1|I|A|479
8E46|1|I|A|480
8E46|1|I|G|481
8E46|1|I|A|482
8E46|1|I|A|483
8E46|1|I|C|484
*
8E46|1|I|G|496
8E46|1|I|A|497
8E46|1|I|G|498
8E46|1|I|U|499
8E46|1|I|G|500
8E46|1|I|A|501
8E46|1|I|A|502
8E46|1|I|A|503
8E46|1|I|A|504
8E46|1|I|A|505
8E46|1|I|G|506
8E46|1|I|A|507
8E46|1|I|A|508
8E46|1|I|C|509
8E46|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22