J3_8E47_010

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8E47|1|I|U|34, 8E47|1|I|U|448, 8E47|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E47_010 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0968

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8E47|1|I|C|32
8E47|1|I|C|33
8E47|1|I|U|34
8E47|1|I|G|35
*
8E47|1|I|C|445
8E47|1|I|G|446
8E47|1|I|A|447
8E47|1|I|U|448
8E47|1|I|A|449
8E47|1|I|G|450
8E47|1|I|U|451
8E47|1|I|G|452
8E47|1|I|A|453
8E47|1|I|A|454
8E47|1|I|C|455
8E47|1|I|C|456
8E47|1|I|A|457
8E47|1|I|G|458
8E47|1|I|U|459
8E47|1|I|A|460
8E47|1|I|C|461
*
8E47|1|I|G|468
8E47|1|I|G|469
8E47|1|I|A|470
8E47|1|I|A|471
8E47|1|I|A|472
8E47|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain R

50S ribosomal protein L34