J3_8E48_011

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8E48|1|I|U|34, 8E48|1|I|U|448, 8E48|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E48_011 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0939

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8E48|1|I|C|32
8E48|1|I|C|33
8E48|1|I|U|34
8E48|1|I|G|35
*
8E48|1|I|C|445
8E48|1|I|G|446
8E48|1|I|A|447
8E48|1|I|U|448
8E48|1|I|A|449
8E48|1|I|G|450
8E48|1|I|U|451
8E48|1|I|G|452
8E48|1|I|A|453
8E48|1|I|A|454
8E48|1|I|C|455
8E48|1|I|C|456
8E48|1|I|A|457
8E48|1|I|G|458
8E48|1|I|U|459
8E48|1|I|A|460
8E48|1|I|C|461
*
8E48|1|I|G|468
8E48|1|I|G|469
8E48|1|I|A|470
8E48|1|I|A|471
8E48|1|I|A|472
8E48|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain R

50S ribosomal protein L34