J3_8E49_001

3D structure

PDB id

8E49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC31

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8E49|1|I|U|686, 8E49|1|I|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E49_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3214

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8E49|1|I|U|683
8E49|1|I|G|684
8E49|1|I|A|685
8E49|1|I|U|686
8E49|1|I|C|687
8E49|1|I|U|688
8E49|1|I|A|689
*
8E49|1|I|U|773
8E49|1|I|G|774
8E49|1|I|G|775
*
8E49|1|I|C|791
8E49|1|I|A|792
8E49|1|I|A|793
8E49|1|I|A|794

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain R

50S ribosomal protein L34