J3_8E49_005

3D structure

PDB id

8E49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC31

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E49_005 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0421

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8E49|1|I|C|2091
8E49|1|I|U|2092
8E49|1|I|G|2093
*
8E49|1|I|C|2196
8E49|1|I|U|2197
8E49|1|I|A|2198
8E49|1|I|A|2199
8E49|1|I|C|2200
*
8E49|1|I|G|2223
8E49|1|I|G|2224
8E49|1|I|A|2225
8E49|1|I|C|2226
8E49|1|I|A|2227
8E49|1|I|G|2228

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2