J3_8E49_011

3D structure

PDB id

8E49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC31

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E49|1|I|A|504, 8E49|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E49_011 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1063

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8E49|1|I|G|30
8E49|1|I|C|31
*
8E49|1|I|G|474
8E49|1|I|C|475
8E49|1|I|G|476
8E49|1|I|A|477
8E49|1|I|A|478
8E49|1|I|A|479
8E49|1|I|A|480
8E49|1|I|G|481
8E49|1|I|A|482
8E49|1|I|A|483
8E49|1|I|C|484
*
8E49|1|I|G|496
8E49|1|I|A|497
8E49|1|I|G|498
8E49|1|I|U|499
8E49|1|I|G|500
8E49|1|I|A|501
8E49|1|I|A|502
8E49|1|I|A|503
8E49|1|I|A|504
8E49|1|I|A|505
8E49|1|I|G|506
8E49|1|I|A|507
8E49|1|I|A|508
8E49|1|I|C|509
8E49|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22