J3_8E49_012

3D structure

PDB id

8E49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC31

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8E49|1|I|U|34, 8E49|1|I|U|448, 8E49|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E49_012 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0474

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8E49|1|I|C|32
8E49|1|I|C|33
8E49|1|I|U|34
8E49|1|I|G|35
*
8E49|1|I|C|445
8E49|1|I|G|446
8E49|1|I|A|447
8E49|1|I|U|448
8E49|1|I|A|449
8E49|1|I|G|450
8E49|1|I|U|451
8E49|1|I|G|452
8E49|1|I|A|453
8E49|1|I|A|454
8E49|1|I|C|455
8E49|1|I|C|456
8E49|1|I|A|457
8E49|1|I|G|458
8E49|1|I|U|459
8E49|1|I|A|460
8E49|1|I|C|461
*
8E49|1|I|G|468
8E49|1|I|G|469
8E49|1|I|A|470
8E49|1|I|A|471
8E49|1|I|A|472
8E49|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain R

50S ribosomal protein L34