J3_8E5T_002

3D structure

PDB id

8E5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAC*GG*CAUAAU

Length

12 nucleotides

Bulged bases

8E5T|1|1|U|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E5T|1|1|A|436
8E5T|1|1|G|437
8E5T|1|1|A|438
8E5T|1|1|C|439
*
8E5T|1|1|G|494
8E5T|1|1|G|495
*
8E5T|1|1|C|618
8E5T|1|1|A|619
8E5T|1|1|U|620
8E5T|1|1|A|621
8E5T|1|1|A|622
8E5T|1|1|U|623

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

NOC2 isoform 1

Chain f

60S ribosomal protein L33-A