J3_8E5T_005

3D structure

PDB id

8E5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAAG*CC*GAGUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E5T|1|1|C|949
8E5T|1|1|G|950
8E5T|1|1|A|951
8E5T|1|1|A|952
8E5T|1|1|G|1161
*
8E5T|1|1|C|1338
8E5T|1|1|C|1339
*
8E5T|1|1|G|1365
8E5T|1|1|A|1366
8E5T|1|1|G|1367
8E5T|1|1|U|1368
8E5T|1|1|A|1369
8E5T|1|1|G|1370

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain F

60S ribosomal protein L7-A

Chain e

60S ribosomal protein L32