3D structure

PDB id
8EIU (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with A-loop mutations U2554C and U2555C
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
CUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8EIU_021 not in the Motif Atlas
Homologous match to J3_5J7L_044
Geometric discrepancy: 0.0545
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn 3-way junction
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

8EIU|1|a|C|2091
8EIU|1|a|U|2092
8EIU|1|a|G|2093
*
8EIU|1|a|C|2196
8EIU|1|a|U|2197
8EIU|1|a|A|2198
8EIU|1|a|A|2199
8EIU|1|a|C|2200
*
8EIU|1|a|G|2223
8EIU|1|a|G|2224
8EIU|1|a|A|2225
8EIU|1|a|C|2226
8EIU|1|a|A|2227
8EIU|1|a|G|2228

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L2
Chain h
50S ribosomal protein L9
Chain w
50S ribosomal protein L28

Coloring options:


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