3D structure

PDB id
8EKB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GCGGGAC*GGCAG*CC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8EKB_009 not in the Motif Atlas
Homologous match to J3_7RQB_009
Geometric discrepancy: 0.0423
The information below is about J3_7RQB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_04858.2
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW
Number of instances in this motif group
3

Unit IDs

8EKB|1|1A|G|1344
8EKB|1|1A|C|1345
8EKB|1|1A|G|1346
8EKB|1|1A|G|1347
8EKB|1|1A|G|1348
8EKB|1|1A|A|1349
8EKB|1|1A|C|1350
*
8EKB|1|1A|G|1381
8EKB|1|1A|G|1382
8EKB|1|1A|C|1383
8EKB|1|1A|A|1384
8EKB|1|1A|G|1385
*
8EKB|1|1A|C|1402
8EKB|1|1A|C|1403

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1X
50S ribosomal protein L23

Coloring options:


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