J3_8EKB_032

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8EKB|1|2A|G|686, 8EKB|1|2A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EKB_032 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0457

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8EKB|1|2A|C|683
8EKB|1|2A|G|684
8EKB|1|2A|A|685
8EKB|1|2A|G|686
8EKB|1|2A|C|687
8EKB|1|2A|U|688
8EKB|1|2A|A|689
*
8EKB|1|2A|U|773
8EKB|1|2A|A|774
8EKB|1|2A|G|775
*
8EKB|1|2A|C|791
8EKB|1|2A|G|792
8EKB|1|2A|A|793
8EKB|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2