J3_8EKB_034

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

8EKB|1|2A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EKB_034 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0524

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8EKB|1|2A|C|1298
8EKB|1|2A|G|1299
8EKB|1|2A|U|1300
8EKB|1|2A|A|1301
8EKB|1|2A|A|1302
8EKB|1|2A|G|1303
*
8EKB|1|2A|C|1625
8EKB|1|2A|G|1626
8EKB|1|2A|G|1627
*
8EKB|1|2A|U|1639
8EKB|1|2A|C|1640
8EKB|1|2A|A|1641
8EKB|1|2A|G|1642

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains