J3_8EKB_064

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8EKB|1|1a|U|1212, 8EKB|1|1a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EKB_064 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1596

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

8EKB|1|1a|C|990
8EKB|1|1a|U|991
8EKB|1|1a|U|992
8EKB|1|1a|G|993
8EKB|1|1a|A|994
8EKB|1|1a|C|995
8EKB|1|1a|A|996
8EKB|1|1a|U|997
*
8EKB|1|1a|A|1044
8EKB|1|1a|C|1045
8EKB|1|1a|A|1046
8EKB|1|1a|G|1047
*
8EKB|1|1a|C|1210
8EKB|1|1a|U|1211
8EKB|1|1a|U|1212
8EKB|1|1a|A|1213
8EKB|1|1a|C|1214
8EKB|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z