J3_8EKB_068

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8EKB|1|2A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EKB_068 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.051

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8EKB|1|2A|C|297
8EKB|1|2A|G|298
8EKB|1|2A|A|299
8EKB|1|2A|A|300
8EKB|1|2A|G|301
*
8EKB|1|2A|C|316
8EKB|1|2A|G|317
8EKB|1|2A|C|318
8EKB|1|2A|C|319
8EKB|1|2A|A|320
8EKB|1|2A|G|321
8EKB|1|2A|A|322
8EKB|1|2A|G|323
8EKB|1|2A|A|324
8EKB|1|2A|G|325
*
8EKB|1|2A|C|337
8EKB|1|2A|G|338
8EKB|1|2A|U|339
8EKB|1|2A|A|340
8EKB|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24