J3_8EKB_077
3D structure
- PDB id
- 8EKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 8EKB|1|2a|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EKB_077 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1429
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8EKB|1|2a|C|1116
8EKB|1|2a|G|1117
8EKB|1|2a|C|1118
*
8EKB|1|2a|G|1155
8EKB|1|2a|G|1156
8EKB|1|2a|A|1157
8EKB|1|2a|C|1158
8EKB|1|2a|U|1159
8EKB|1|2a|G|1160
8EKB|1|2a|C|1161
*
8EKB|1|2a|G|1175
8EKB|1|2a|A|1176
8EKB|1|2a|G|1177
8EKB|1|2a|G|1178
8EKB|1|2a|A|1179
8EKB|1|2a|A|1180
8EKB|1|2a|G|1181
8EKB|1|2a|G|1182
8EKB|1|2a|A|1183
8EKB|1|2a|G|1184
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2b
- 30S ribosomal protein S2
- Chain 2i
- 30S ribosomal protein S9
- Chain 2j
- 30S ribosomal protein S10
- Chain 2n
- 30S ribosomal protein S14 type Z
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