J3_8EKC_006

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8EKC|1|A|C|1606, 8EKC|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EKC_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.3555

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8EKC|1|A|C|1306
8EKC|1|A|A|1307
8EKC|1|A|A|1308
8EKC|1|A|G|1309
*
8EKC|1|A|C|1605
8EKC|1|A|C|1606
8EKC|1|A|C|1607
8EKC|1|A|A|1608
8EKC|1|A|A|1609
8EKC|1|A|A|1610
8EKC|1|A|C|1611
*
8EKC|1|A|G|1620
8EKC|1|A|U|1621
8EKC|1|A|G|1622

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34