J3_8EKC_008

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EKC_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0723

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8EKC|1|A|C|2091
8EKC|1|A|U|2092
8EKC|1|A|G|2093
*
8EKC|1|A|C|2196
8EKC|1|A|U|2197
8EKC|1|A|A|2198
8EKC|1|A|A|2199
8EKC|1|A|C|2200
*
8EKC|1|A|G|2223
8EKC|1|A|G|2224
8EKC|1|A|A|2225
8EKC|1|A|C|2226
8EKC|1|A|A|2227
8EKC|1|A|G|2228

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain Z

50S ribosomal protein L28