J3_8EUB_004

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EUB_004 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.1934

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8EUB|1|A1|G|1230
8EUB|1|A1|A|1231
8EUB|1|A1|C|1232
*
8EUB|1|A1|G|1256
8EUB|1|A1|C|1257
8EUB|1|A1|U|1258
8EUB|1|A1|A|1259
8EUB|1|A1|A|1260
8EUB|1|A1|G|1261
8EUB|1|A1|G|1262
*
8EUB|1|A1|C|1277
8EUB|1|A1|A|1278
8EUB|1|A1|C|1279

Current chains

Chain A1

28S rRNA

Nearby chains

Chain VA

60S acidic ribosomal protein P0