J3_8EUB_028
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8EUB|1|A1|A|398, 8EUB|1|A1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EUB_028 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0725
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8EUB|1|A1|A|369
8EUB|1|A1|U|370
8EUB|1|A1|G|371
8EUB|1|A1|A|372
8EUB|1|A1|A|373
8EUB|1|A1|A|374
8EUB|1|A1|A|375
8EUB|1|A1|G|376
8EUB|1|A1|A|377
8EUB|1|A1|A|378
8EUB|1|A1|C|379
*
8EUB|1|A1|G|390
8EUB|1|A1|A|391
8EUB|1|A1|G|392
8EUB|1|A1|U|393
8EUB|1|A1|G|394
8EUB|1|A1|A|395
8EUB|1|A1|A|396
8EUB|1|A1|A|397
8EUB|1|A1|A|398
8EUB|1|A1|A|399
8EUB|1|A1|G|400
8EUB|1|A1|U|401
8EUB|1|A1|A|402
8EUB|1|A1|C|403
8EUB|1|A1|G|404
*
8EUB|1|A4|C|19
8EUB|1|A4|U|20
Current chains
- Chain A1
- 28S rRNA
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AP
- 60S ribosomal protein L17-A
- Chain AY
- 60S ribosomal protein L26-A
- Chain Al
- 60S ribosomal protein L39
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