J3_8EUB_030
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- UAG*CGUA(OMG)*UCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EUB_030 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.0825
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8EUB|1|A1|U|829
8EUB|1|A1|A|830
8EUB|1|A1|G|831
*
8EUB|1|A1|C|863
8EUB|1|A1|G|864
8EUB|1|A1|U|865
8EUB|1|A1|A|866
8EUB|1|A1|OMG|867
*
8EUB|1|A1|U|892
8EUB|1|A1|C|893
8EUB|1|A1|G|894
8EUB|1|A1|A|895
Current chains
- Chain A1
- 28S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AR
- 60S ribosomal protein L19-A
- Chain Ag
- 60S ribosomal protein L34-A
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