J3_8EUB_033
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGG*CCACCAU
- Length
- 24 nucleotides
- Bulged bases
- 8EUB|1|A1|C|1556, 8EUB|1|A1|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EUB_033 not in the Motif Atlas
- Homologous match to J3_8C3A_053
- Geometric discrepancy: 0.5787
- The information below is about J3_8C3A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34234.1
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8EUB|1|A1|A|1537
8EUB|1|A1|G|1538
8EUB|1|A1|A|1539
8EUB|1|A1|U|1540
8EUB|1|A1|G|1541
8EUB|1|A1|G|1542
*
8EUB|1|A1|C|1551
8EUB|1|A1|G|1552
8EUB|1|A1|U|1553
8EUB|1|A1|U|1554
8EUB|1|A1|U|1555
8EUB|1|A1|C|1556
8EUB|1|A1|A|1557
8EUB|1|A1|A|1558
8EUB|1|A1|A|1559
8EUB|1|A1|G|1560
8EUB|1|A1|G|1561
*
8EUB|1|A1|C|1578
8EUB|1|A1|C|1579
8EUB|1|A1|A|1580
8EUB|1|A1|C|1581
8EUB|1|A1|C|1582
8EUB|1|A1|A|1583
8EUB|1|A1|U|1584
Current chains
- Chain A1
- 28S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AA
- 60S ribosomal protein L2-A
- Chain AG
- 60S ribosomal protein L8-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain AX
- 60S ribosomal protein L25
- Chain Aj
- 60S ribosomal protein L37-A
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