J3_8EV6_039

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8EV6|1|1A|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EV6_039 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0653

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8EV6|1|1A|C|321
8EV6|1|1A|G|322
8EV6|1|1A|A|323
8EV6|1|1A|A|324
8EV6|1|1A|G|325
*
8EV6|1|1A|C|340
8EV6|1|1A|G|341
8EV6|1|1A|C|342
8EV6|1|1A|C|343
8EV6|1|1A|A|344
8EV6|1|1A|G|345
8EV6|1|1A|A|346
8EV6|1|1A|G|347
8EV6|1|1A|A|348
8EV6|1|1A|G|349
*
8EV6|1|1A|C|361
8EV6|1|1A|G|362
8EV6|1|1A|U|363
8EV6|1|1A|A|364
8EV6|1|1A|G|365

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24