J3_8EV6_042
3D structure
- PDB id
- 8EV6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.946 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8EV6|1|1A|A|2400, 8EV6|1|1A|U|2402, 8EV6|1|1A|A|2438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EV6_042 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.0643
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8EV6|1|1A|G|2294
8EV6|1|1A|C|2295
8EV6|1|1A|C|2296
*
8EV6|1|1A|G|2396
8EV6|1|1A|C|2397
8EV6|1|1A|C|2398
8EV6|1|1A|U|2399
8EV6|1|1A|A|2400
8EV6|1|1A|G|2401
8EV6|1|1A|U|2402
8EV6|1|1A|G|2403
8EV6|1|1A|A|2404
8EV6|1|1A|A|2405
8EV6|1|1A|C|2406
8EV6|1|1A|C|2407
*
8EV6|1|1A|G|2433
8EV6|1|1A|A|2434
8EV6|1|1A|U|2435
8EV6|1|1A|C|2436
8EV6|1|1A|A|2437
8EV6|1|1A|A|2438
8EV6|1|1A|C|2439
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1P
- 50S ribosomal protein L15
- Chain 1y
- Transfer RNA; tRNA
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