J3_8EV6_056

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8EV6|1|2A|C|34, 8EV6|1|2A|U|448, 8EV6|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EV6_056 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0807

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.2

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

8EV6|1|2A|C|32
8EV6|1|2A|U|33
8EV6|1|2A|C|34
8EV6|1|2A|G|35
*
8EV6|1|2A|C|445
8EV6|1|2A|G|446
8EV6|1|2A|A|447
8EV6|1|2A|U|448
8EV6|1|2A|A|449
8EV6|1|2A|G|450
8EV6|1|2A|C|451
8EV6|1|2A|G|452
8EV6|1|2A|C|453
8EV6|1|2A|A|454
8EV6|1|2A|C|455
8EV6|1|2A|C|456
8EV6|1|2A|A|457
8EV6|1|2A|G|458
8EV6|1|2A|U|459
8EV6|1|2A|A|460
8EV6|1|2A|C|461
*
8EV6|1|2A|G|468
8EV6|1|2A|G|469
8EV6|1|2A|A|470
8EV6|1|2A|A|471
8EV6|1|2A|A|472
8EV6|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23